Introduction of ABCA4
ABCA4 encoded by ABCA4 gene is a member of the superfamily of ATP-binding cassette (ABC) transporters which transport various molecules across extra- and intracellular membranes. There are seven subfamilies in ABC superfamily named as ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White, respectively. ABCA4 protein belongs to ABC1 subfamily which consists of two transmembrane domains, two large extracellular domains, and two internal nucleotide binding domains.
Basic Information of ABCA4 | |
Protein Name | Retinal-specific ATP-binding cassette transporter |
Gene Name | ABCA4 |
Aliases | FFM, RMP, ABCR, RP19, STGD, ABC10, ARMD2, CORD3, STGD1 |
Organism | Homo sapiens (Human) |
UniProt ID | P78363 |
Transmembrane Times | 12 |
Length (aa) | 2273 |
Sequence | MGFVRQIQLLLWKNWTLRKRQKIRFVVELVWPLSLFLVLIWLRNANPLYSHHECHFPNKAMPSAGMLPWLQGIFCNVNNPCFQSPTPGESPGIVSNYNNSILARVYRDFQELLMNAPESQHLGRIWTELHILSQFMDTLRTHPERIAGRGIRIRDILKDEETLTLFLIKNIGLSDSVVYLLINSQVRPEQFAHGVPDLALKDIACSEALLERFIIFSQRRGAKTVRYALCSLSQGTLQWIEDTLYANVDFFKLFRVLPTLLDSRSQGINLRSWGGILSDMSPRIQEFIHRPSMQDLLWVTRPLMQNGGPETFTKLMGILSDLLCGYPEGGGSRVLSFNWYEDNNYKAFLGIDSTRKDPIYSYDRRTTSFCNALIQSLESNPLTKIAWRAAKPLLMGKILYTPDSPAARRILKNANSTFEELEHVRKLVKAWEEVGPQIWYFFDNSTQMNMIRDTLGNPTVKDFLNRQLGEEGITAEAILNFLYKGPRESQADDMANFDWRDIFNITDRTLRLVNQYLECLVLDKFESYNDETQLTQRALSLLEENMFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQVQAEAPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMLCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTAELKKAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPTEGDEFSFLLSMQMMLLDAAVYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKTEPLTEETEDPEHPEGIHDSFFEREHPGWVPGVCVKNLVKIFEPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGRDIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIIAQGRLYCSGTPLFLKNCFGTGLYLTLVRKMKNIQSQRKGSEGTCSCSSKGFSTTCPAHVDDLTPEQVLDGDVNELMDVVLHHVPEAKLVECIGQELIFLLPNKNFKHRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDSDSGPLFAGGAQQKRENVNPRHPCLGPREKAGQTPQDSNVCSPGAPAAHPEGQPPPEPECPGPQLNTGTQLVLQHVQALLVKRFQHTIRSHKDFLAQIVLPATFVFLALMLSIVIPPFGEYPALTLHPWIYGQQYTFFSMDEPGSEQFTVLADVLLNKPGFGNRCLKEGWLPEYPCGNSTPWKTPSVSPNITQLFQKQKWTQVNPSPSCRCSTREKLTMLPECPEGAGGLPPPQRTQRSTEILQDLTDRNISDFLVKTYPALIRSSLKSKFWVNEQRYGGISIGGKLPVVPITGEALVGFLSDLGRIMNVSGGPITREASKEIPDFLKHLETEDNIKVWFNNKGWHALVSFLNVAHNAILRASLPKDRSPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFSMSFVPASFVLYLIQERVNKSKHLQFISGVSPTTYWVTNFLWDIMNYSVSAGLVVGIFIGFQKKAYTSPENLPALVALLLLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFILELFENNRTLLRFNAVLRKLLIVFPHFCLGRGLIDLALSQAVTDVYARFGEEHSANPFHWDLIGKNLFAMVVEGVVYFLLTLLVQRHFFLSQWIAEPTKEPIVDEDDDVAEERQRIITGGNKTDILRLHELTKIYPGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISEVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPAEEIEKVANWSIKSLGLTVYADCLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFRCMGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSSSLARIFQLLLSHKDSLLIEEYSVTQTTLDQVFVNFAKQQTESHDLPLHPRAAGASRQAQD |
Function of ABCA4 Membrane Protein
ABCA4 is a transmembrane protein located in rod and cone outer segment disc membranes. It functions as an inward-directed retinoid flippase in the visual cycle and transports retinoid substrates that are all all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE) from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface. Then ATR on the cytoplasmic membrane surface converts into vitamin A by trans-retinol dehydrogenase (tRDH) and then transforms into 11-cis-retinal on the retinal pigment epithelium (RPE). Hence, ABCA4 exerts a key role in clearing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery. ABCA4 knockout mouse may display a delayed dark adaptation and accumulate all-trans-retinaldehyde following light exposure. And variants in ABCA4 are associated with autosomal-recessive disease - Stargardt macular dystrophy (STGD). In addition, mutations in ABCA4 are also linked to other eye diseases such as cone-rod dystrophy type 3, fundus flavimaculatus, early-onset severe retinal dystrophy, and macular degeneration age-related 2.
Fig.1 Diagram showing the reactions involved in the clearance of 11-cis- and all-trans-retinal from photoreceptor disk membranes. (Quazi, 2014)
Application of ABCA4 Membrane Protein in Literature
The study shows a common ABCA4 variant p.Asn1868Ile in a lot of nonpenetrance and variable expression of Stargardt disease (STGD1) cases.
The study shows 211 likely pathogenic variants are detected in the total 345 participants with a clinical diagnosis of STGD1. And among those, 50 variants are first reported. Moreover, there are significant differences in allele frequency of 9 variants between 4 nations.
The study shows that the expression and residual activity of ABCA4 mutants are responsible for the phenotype of patients with Stargardt disease.
The study reveals three non-coding pathogenic variants of ABCA4 in Stargardt disease patients of European descent. And the non-coding pathogenic variants can be determined by integrated clinical and genetic outcomes.
The authors analyze the ABCA4 mutations of 59 patients with Stargardt disease and identify 6 novel and potentially pathogenic mutations in ABCA4.
ABCA4 Preparation Options
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