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Consistent with the view that these two polymorphic MHC residues affect peptide-binding preference, identification of the endogenous peptide (pBM8: SQYYYNSL) recognized by the BM3.3 TCR in the context of H-2Kbm8 showed that its anchor residues differed from the ones found in pBM1 and VSV8 sequences. Moreover, further comparison of the pBM8 sequence with that of pBM1 (INFDFNTI) and VSV8 (RGYVYQGL) revealed a single homologous TCR-exposed residue at P6. In contrast, the two other TCR-exposed residues found in the three peptides recognized by BM3.3 showed non-conservative substitutions.
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