Library Display-Based VHH Discovery

Hi-Affi™ Phage Display Platform Yeast Display Platform Immune sdAb Library Naïve sdAb Library Synthetic sdAb Library Case Study Published Data FAQ Resources

Hi-Affi™ Phage Display Platform

Creative Biolabs is recognized as a leading expert in applying advanced Hi-Affi™ Phage Display Platform and our Yeast Surface Display Platform for a broad range of VHH discovery projects. Our Hi-Affi™ platform can generate high-quality VHH libraries from various sources with maximized diversity and library capacity of up to 1011. Subsequently, our scientists can tailor the best-fit library screening and binder validation procedures to select specific binders with high affinity, ranging from 108-1012.

Typical Features of Hi-Affi™ Phage Display Platform

Yeast Surface Display Platform

The yeast surface display system described in Saccharomyces cerevisiae agglutinin is an invaluable tool for generating VHHs. Each VHH can be displayed in high copy numbers (104~105) on the surface of a single cell. Using this approach, a VHH library with approximately 107~109 clones could be built for further screening and selection of antigen-specific VHH binders.

Our yeast surface display platform allows the use of not only purified proteins but also insoluble proteins and even some unknown targets. Subsequently, VHHs can be efficiently selected using magnetic-activated cell sorting (MACS) and fluorescence-activated cell sorting (FACS) to yield single-nanomolar affinity VHHs. The yeast surface display platform available at Creative Biolabs is particularly leading and influential due to its unique superiority in MACS and FACS.

Typical Features of Yeast Display Platform

Phage and yeast display are powerful and widely used techniques for displaying VHHs on the surface of phages or yeasts and then isolating specific VHHs against the target of interest. Considering the natural differences among various targets, it is crucial to determine the most suitable source for library construction early in a VHH development project. With our professional scientists who have over ten years of experience in antibody drug discovery, Creative Biolabs has the capacity to tailor the best-fit source and generate high-quality libraries to lay a solid foundation for your project.

Based on the source, qualified VHH libraries are mainly divided into two categories, immune libraries and non-immune libraries. Non-immune libraries can also be subdivided into naïve libraries and synthetic libraries.

Immune VHH Library

An immune library is constructed from natural infections or immunized donors to obtain antibodies against a particular target. As V genes collected for immune libraries contain hypermutations and have undergone in vivo affinity maturation, target-specific VHHs with high affinity can be selected if an immune response can be triggered by the target. This approach is widely applicable to various immunogenic targets (e.g., soluble proteins, peptides, DNA, whole cells).

Creative Biolabs has unparalleled capabilities for constructing VHH or VNAR based single domain antibody libraries through immunized camel, llama, alpaca or even shark.

Naïve VHH Library

A naïve library is derived from primary B cells of non-immunized donors, in which a large repertoire of naturally rearranged V genes is collected for library construction. Generally, multiple host animals are employed in the VHH repertoire collection, contributing to a universal library that should not contain bias towards a specific target. In other words, a qualified naïve library is expected to isolate binders against all types of antigenic targets. Typically, the affinity of selected antibodies from the naïve library is proportional to the size of the library. Due to the lack of in vivo affinity maturation against a specific antigen, an additional affinity maturation process is sometimes required to further increase the affinity of selected VHHs.

Creative Biolabs can generate a high-quality naïve VHH library for research purposes or industry applications. With our abundant host animal sources and advanced Hi-Affi™ platform, a unique naïve library with a capacity of 1011 can be generated upon request.

Synthetic VHH Library

A synthetic library is based on the in silico design and is generated in a controlled manner. Unlike immune or naïve libraries, where the origin of antibody repertoires is amplified from natural sources, the diversity of synthetic libraries relies on proper design. The ratio of natural to designed components determines whether the library is classified as semi-synthetic or fully synthetic. A typical advantage of a synthetic library is that the composition of CDR regions can be exactly defined and controlled. It is also a novel option to obtain camelid human single domain antibodies. Similar to the naïve library, synthetic libraries are antigen-independent and can be used for unbiased selection of VHHs against any target.

Creative Biolabs has mature designs and reliable solutions for synthetic VHH library construction. Our scientists provide a series of blueprints for either regular or human VHH libraries, which can fulfill your project demands.

In addition to generating a fully customized VHH library, Creative Biolabs can also provide a cost-effective option for specific VHH discovery with a shorter lead time. In the past ten years, our scientists have generated a series of VHH libraries in-house. These libraries were preselected based on thermostability and can now serve as a valuable resource for your projects. Some of these premade VHH libraries are even available for licensing, including:

Creative Biolabs has extensive experience in providing highly customized screening strategies for novel VHH discovery. We have successfully overcome many challenging targets (e.g., membrane proteins, small molecules, and PTM-modified peptides) and selected specific VHHs. Based on the target properties and your specific project goals, our scientists are pleased to tailor a suitable strategy to achieve your objectives.

An example of library screening and validation processes. (Creative Biolabs Original)

If you are interested in the discovery and development of novel single domain antibodies, please do not hesitate to contact us for more details.

Published Data

Fig. 1 Identification and Analysis of CHIKV E2-targeting VHHs from a Naive Phage Display Selection.1,2

This study identified 20 VHH antibodies against the CHIKV E2 glycoprotein from an alpaca naive phage display library. It also illustrated the expression and purification of the selected VHH antibodies and validated their specificity to the CHIKV E2 protein and relevant binding kinetics, revealing that Nb-2E8 and Nb-3C5 exhibit high-affinity binding in the nanomolar range, with strength 100 times greater than that of monovalent antibodies. The aforementioned Fig.1 describes the screening process of VHH antibodies from the phage display library and the identification of 20 unique antibodies. It demonstrates the effectiveness of the screening method and the diversity of the selected antibodies, providing candidate antibodies for further functional studies. Overall, this research presents a universal method of CHIKV E2-targeting VHH discovery using a phage library and offers a novel strategy for the early diagnosis of CHIKV.

References

  1. Li, Qianlin, et al. "Highly potent multivalent VHH antibodies against Chikungunya isolated from an alpaca naïve phage display library." Journal of Nanobiotechnology 20.1 (2022): 231.
  2. Under Open Access license CC BY 4.0, without modification.
  3. Ledsgaard, Line, et al. "Basics of antibody phage display technology." Toxins 10.6 (2018): 236. Distributed under Open Access license CC BY 4.0, without modification.

FAQ

1. Q: How to calculate the capacity of constructed library?

2. Q: How to validate the quality of constructed library?

3. Q: How to evaluate the diversity of constructed library?

4. Q: How to choose between the immune library and premade library?

5. Q: Which kind of starting material can be accepted for naïve library construction?

6. Q: How to identify specific binders after the screening process?

7. Q: What is the lead time for a general sdAb discovery project?

8. Q: Are there any additional deliverables available for our internal test?

9. Q: Could the helper phage be titrated by blue-white screening?

10. Q: What is the difference between pfu and cfu?

11. Q: Are anti-M13 antibodies available?

12. Q: Deliverables of Library Construction & Screening Stage

Resources

We are offering highly customized CRO services to assist your Single Domain Antibody (sdAb) related projects. Please Contact Us for more details.

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