Histoplasma capsulatum-derived Exosome Research and Application

The process of fungus-derived exosomes delivering some level of specific components has been studied in relation to the pathogenic mechanisms of their parent fungi. Histoplasma capsulatum-derived exosomes harbor and release strain-specific RNAs, as well as the regulation of exosome release by active chitinase cargoes has been described. Creative Biolabs has the expertise and full range of exosome services to meet the research needs of clients' fungal vesicle projects.

Isolation of Histoplasma capsulatum-derived Exosome

  1. Resuscitate Histoplasma capsulatum and verify their viability. Then shaking culture to obtain Histoplasma capsulatum culture supernatant.
  2. Centrifuge to remove fungal cells and then further centrifuge to remove Histoplasma capsulatum debris from the supernatant.
  3. Concentrate the Histoplasma capsulatum supernatant with an ultrafiltration system.
  4. Centrifuge again to ensure all fungal debris and impurities are removed.
  5. Ultracentrifuge to collect Histoplasma capsulatum-derived exosomes precipitate.
  6. Resuspend and centrifuge serially with TBS to obtain the final Histoplasma capsulatum-derived exosome products.

Gene ontology analysis of Histoplasma capsulatum-derived exosomes. (Alves, et al., 2019)Fig. 1 Gene ontology analysis of Histoplasma capsulatum-derived exosomes.1

Research on Histoplasma capsulatum-derived Exosome

Research Conclusion
Histoplasma capsulatum-derived exosomes contained strain-specific content of RNA. Full-length transcript characterization of exosomal RNAs from two different Histoplasma capsulatum strains detected a total of 124 mRNA sequences, showing significant differences in mRNA composition between the two strains. Gene ontology analysis revealed that 93 transcripts enriched in one strain were involved in transport, redox processes, translation, and phosphorylation, while 31 enriched in another strain were involved in cellular, metabolic, and bioregulatory processes.
Detection of short mRNAs and miRNAs in Histoplasma capsulatum-derived exosomes. It was found that nearly half of the short-read RNAs of Histoplasma capsulatum-derived exosomes were involved in the translation of proteins of unknown processes, followed by those related to DNA metabolism/biogenesis, and also those related to other processes such as protein modification, signal transduction, and lipid metabolism.
Notably, translation-associated RNAs were just found to be highly enriched in one strain, while RNAs associated with translational stress proteins were just found in the other strain. Moreover, prediction of secondary structure based on RNA sequencing data confirmed the presence of miRNAs as well.
Profiling of ncRNAs and proteins in Histoplasma capsulatum-derived exosomes. The majority of the ncRNA classes in Histoplasma capsulatum-derived exosomes were identified as tRNAs by the ncRNA database, and proteomic analyses revealed the presence of proteins involved in RNA metabolism, such as Nrd1, ribosomal proteins, and argonaute protein QDE2, in Histoplasma capsulatum-derived exosomes.
Comparison of parental RNA and Histoplasma capsulatum-derived exosomal RNA. The correlation between transcripts highly expressed in the parent fungus and their presence in Histoplasma capsulatum-derived exosomes was found to be low, and transcripts grouped based on biological processes varied greatly. This suggests the existence of mechanisms in fungi that direct RNA to their exosomes.
Histoplasma capsulatum-derived exosomes were assayed to carry chitinase activity. Fluorometric measurement of chitinase activity revealed that Histoplasma capsulatum-derived exosomes hydrolyzed the chitinase substrate, which was counteracted by methylxanthines in a dose-dependent manner.
Effect of chitinase inhibition on Histoplasma capsulatum-derived exosome release. Transmission electron microscopy observations and NTA assays revealed that the amount of exosome released from the methylxanthines-treated Histoplasma capsulatum group was significantly reduced compared to the control group.
Growth curve results showed that this methylxanthines treatment, which inhibited chitinase, suppressed the proliferation of Histoplasma capsulatum.
Proteomic analysis revealed that methylxanthine treatment did not reduce the protein load of the Histoplasma capsulatum-derived exosome, confirming that the inhibition of chitinase activity was not caused by a reduction in protein cargo.
Chitinase inhibition diminished Histoplasma capsulatum-derived exosome-mediated fungal pathogenicity. Histoplasma capsulatum-infected G. mellonella larvae were used as models to determine the role of chitinase, which showed that treatment to inhibit chitinase rescued larvae from death. Moreover, co-injection of Histoplasma capsulatum and its exosomes further increased the mortality of larvae compared to larvae infected only with Histoplasma capsulatum.

Inhibition of chitinase significantly reduced the release of Histoplasma capsulatum-derived exosomes. (Valdez, et al., 2023)Fig. 2 Inhibition of chitinase significantly reduced the release of Histoplasma capsulatum-derived exosomes.2

Histoplasma capsulatum-derived exosome has been found to transport mRNAs, non-coding RNAs, and RNA-binding proteins that mediate symbiotic and opportunistic fungal-host communication, and to carry active chitinase enzymes that regulate the fungal release of these exosomes. Creative Biolabs provides comprehensive research services in sequencing and muti-omics profiling to help clients understand the biological role of fungal vesicles in recipient cells. Please contact us with your research needs.

References

  1. Alves, Lysangela R., et al. "Extracellular vesicle-mediated RNA release in Histoplasma capsulatum." Msphere 4.2 (2019): 10-1128.
  2. Valdez, Alessandro F., et al. "Traversing the Cell Wall: The Chitinolytic Activity of Histoplasma capsulatum Extracellular Vesicles Facilitates Their Release." Journal of Fungi 9.11 (2023): 1052.
For Research Use Only. Cannot be used by patients.
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